…tation

- Added CLAUDE.md creation to 'hooks init' command
- Includes complete hooks documentation and CLI commands
- Added --no-claude-md flag to skip CLAUDE.md creation
- Respects existing CLAUDE.md unless --force is used

- Add environment variables (RUVECTOR_INTELLIGENCE_ENABLED, LEARNING_RATE, etc.)
- Add permissions configuration (allow/deny lists)
- Add UserPromptSubmit hook for context suggestions
- Add PreCompact hook for preserving context before compaction
- Add Notification hook for event tracking
- Add --minimal flag for basic hooks only
- Add --no-env and --no-permissions flags
- Updated CLAUDE.md template with complete documentation

… init

New commands:
- hooks verify: Check if hooks are working correctly
- hooks doctor: Diagnose and fix setup issues (with --fix)
- hooks export: Export intelligence data for backup
- hooks import: Import intelligence data (with --merge, --dry-run)

Enhanced init:
- Auto-detect project type (Rust, Node, Python, Go, Ruby, Java)
- Project-specific permissions (cargo for Rust, npm for Node, etc.)
- StatusLine configuration with .claude/statusline.sh
- MCP server configuration (claude-flow)
- .gitignore update (adds .ruvector/)
- Creates .ruvector/ directory

New options for init:
- --no-gitignore: Skip .gitignore update
- --no-mcp: Skip MCP server configuration
- --no-statusline: Skip statusLine configuration

New command:
- hooks pretrain: Bootstrap intelligence by analyzing repository
  - Phase 1: Analyze file structure → agent routing patterns
  - Phase 2: Analyze git history → co-edit patterns
  - Phase 3: Create vector memories from key files
  - Phase 4: Build directory-agent mappings

Options:
  --depth <n>: Git history depth (default: 100)
  --workers <n>: Parallel workers (default: 4)
  --skip-git: Skip git history analysis
  --skip-files: Skip file structure analysis
  --verbose: Show detailed progress

Fix:
- Removed fork bomb pattern from deny list (caused validation error)

…nto init

New command:
- hooks build-agents: Generate optimized agent configs based on repo analysis
  - Focus modes: quality, speed, security, testing, fullstack
  - Detects languages (Rust, TypeScript, Python, Go) and frameworks (React, Vue)
  - Generates YAML/JSON/MD agent definitions with system prompts
  - Creates coordinator agent with routing rules
  - Outputs to .claude/agents/

Init enhancements:
- --pretrain: Bootstrap intelligence after init
- --build-agents [focus]: Generate agents after init

Example: npx ruvector hooks init --pretrain --build-agents security

- Intelligence now saves to .ruvector/intelligence.json in project dir
- Falls back to ~/.ruvector/ only if no project context found
- Prefers project-local when .ruvector/ or .claude/ exists
- Fixes verify showing 'will be created' after pretrain

- Added hooks feature summary near top of README.md
- Created comprehensive HOOKS.md documentation
- Links to detailed docs for pretrain, build-agents, verify, etc.

Add Model Context Protocol (MCP) server with stdio transport for
seamless Claude Code integration. Provides 10 self-learning
intelligence tools via JSON-RPC protocol.

New commands:
- `npx ruvector mcp start` - Start MCP server
- `npx ruvector mcp info` - Show setup instructions

MCP Tools:
- hooks_stats - Get intelligence statistics
- hooks_route - Route task to best agent
- hooks_remember - Store context in vector memory
- hooks_recall - Search vector memory semantically
- hooks_init - Initialize hooks in project
- hooks_pretrain - Pretrain from repository
- hooks_build_agents - Generate agent configs
- hooks_verify - Verify hooks configuration
- hooks_doctor - Diagnose setup issues
- hooks_export - Export intelligence data

MCP Resources:
- ruvector://intelligence/stats
- ruvector://intelligence/patterns
- ruvector://intelligence/memories

Setup: claude mcp add ruvector npx ruvector mcp start

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

…d attention

- Add IntelligenceEngine class integrating VectorDB, SONA, and Attention
- Add 11 new MCP tools (22 total): trajectory tracking, co-edit patterns,
  error suggestions, swarm recommendations, force learning
- Add 8 new CLI commands: trajectory-begin/step/end, coedit-record/suggest,
  error-record/suggest, force-learn
- Integrate Flash/MultiHead attention for embeddings with fallbacks
- Add Read/Glob/Task hooks to settings.json for pattern learning
- Fix @ruvector/attention-linux-x64-gnu (publish v0.1.3)
- Published ruvector@0.1.53

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>